Upgrading R + Bioconductor

Consider this post as a personal note to my future self I have just learnt that Bioconductor developers should NOT always use the development version. On the official website it says: This means that, from mid-October through mid-April, Bioconductor developers should be developing against R-devel. From mid-April to mid-October, developers should use R-release (actually, the R snapshot from the R-x-y-branch) for Bioconductor development. So I needed to change my R version from development to release and I did.

scfind

scfind is a tool that allows one to search large single cell RNA-Seq collections using either cells, gene lists or GO term lists…

How to start working with R

I’ve just come across a great blog post about the best way of starting data analysis in R…

SC3 poster

Some photos from the Functional Genomics & Systems Biology conference…

SC3 - consensus clustering of single cell RNA Seq data

Today I presented the SC3 tool that I am developing for clustering of single-cell RNA-Seq data…

easy-Report script for easy R reporting

Here I describe a script I wrote for easy reporting in R…