Posts

Bioinformatics Algorithms

Today I received one of the best recent Bioinformatics books - Bioinformatics Algorithms by Phillip Compeau & Pavel Pevzner…

ISMB 2015 Poster

At ISMB-201 in Dublin I presented a poster on my previous PostDoc project: ‘Perturbations of PIP3 signalling trigger a global remodelling of gene expression and reveal a transcriptional feedback loop’…

Job applications

Below is a timeline of my job applications since PhD. You can drag it to see the latest applications…

K-mer expected number of occurrences in a DNA string

Please find full description here: K-mer expected number of occurrences in a DNA string

Interesting bioinformatics questions

I’ve created a GitHub repository where I will store my scripts and descriptions of some bioinformatics questions…

Array and Sequential Cluster Jobs

Why didn’t I know about Array and Sequential Cluster Jobs before??? Very-very useful!

https://hopstat.wordpress.com/2013/11/05/array-and-sequential-cluster-jobs/

easy-Report script for easy R reporting

Here I describe a script I wrote for easy reporting in R…

Bioinformatics Algorithms Online Course

I am going to take the following online course which starts at the end of October: https://www.coursera.org/course/bioinformatics If you are interested and would like to join, please let me know, I think it would be more productive if we share our experiences! In addition I would also highly recommend this educational resource: www.rosalind.info It is made by the same people who organised the course and is a very good complementary exercise.

Sublime SFTP package

I’ve become an addicted fan of the Sublime Text editor. This is the most amazing text editor I’ve worked with…

Automated snapshotting with IGV genomic browser

Description of how to run an automated snapshotting using IGV browser…