Posts

ISMARA client

ISMARA is a very nice tools that allows one to obtain transcription factor activities from only RNA-Seq or Chip-Seq data…

Bioinformatics Algorithms

Today I received one of the best recent Bioinformatics books - Bioinformatics Algorithms by Phillip Compeau & Pavel Pevzner…

ISMB 2015 Poster

At ISMB-201 in Dublin I presented a poster on my previous PostDoc project: ‘Perturbations of PIP3 signalling trigger a global remodelling of gene expression and reveal a transcriptional feedback loop’…

Job applications

Below is a timeline of my job applications since PhD. You can drag it to see the latest applications…

K-mer expected number of occurrences in a DNA string

Please find full description here: K-mer expected number of occurrences in a DNA string

Interesting bioinformatics questions

I’ve created a GitHub repository where I will store my scripts and descriptions of some bioinformatics questions…

Array and Sequential Cluster Jobs

Why didn’t I know about Array and Sequential Cluster Jobs before??? Very-very useful!

https://hopstat.wordpress.com/2013/11/05/array-and-sequential-cluster-jobs/

easy-Report script for easy R reporting

Here I describe a script I wrote for easy reporting in R…

Bioinformatics Algorithms Online Course

I am going to take the following online course which starts at the end of October: https://www.coursera.org/course/bioinformatics If you are interested and would like to join, please let me know, I think it would be more productive if we share our experiences! In addition I would also highly recommend this educational resource: www.rosalind.info It is made by the same people who organised the course and is a very good complementary exercise.

Sublime SFTP package

I’ve become an addicted fan of the Sublime Text editor. This is the most amazing text editor I’ve worked with…